Jim, I have similar issues with cyano. 90% of my cyano grows on the substrate. I replaced my 1 1400gph power head with two 750 gph evolution powerheads.
The result didn't seem to change the cyano. I turned off the lights and reduced the photoperiod to 4 or 5 hours a day from 11 hours for 2 or 3 days. This caused the cyano to receed some, and the substrate to turn white from brown. (brown algae I assume. )
After 3 days of this, I went back to a regular photo period, same thing, cyano grew back and the brown ucky looking algae was back on mainly the sand. It grew faster this time and shrouded an entire rock (small one about 4" in diameter if that), and started covering another free standing rock near it. I pulled both rocks out and washed them in fresh RO water. Put them both back in the tank. Cyano continued growing on the sand, not on the rocks.
So, I said I'm finally done with cyano, I'm going to take more steps. I bought a 6400k CFL bulb (60watt) put it over my sump, got some Chaeto put it in my sump, and waited.
Sunday was exactly 1 week since I introduced the Chaeto to my tank. As of yesterday, the sand is looking whiter, the cyano is now just limited to a couple shells in the sand bed, and has stopped regrowing on the sand. I would go to the point of saying that in under a week's time it has receeded.
I haven't done any water changes in the last month or changed any other parameters significantly. I top off around 1 to 2 gallons daily. my alk tends to remain between 9 and 10. Ph tends to remain stable around 8.2.
The water also seems to look a lot clearer / cleaner. I have a 55g with 14g sump, and my tank is around 4 .5 months old now. With only 3 fish.
I seem to be noticing very positive results from the macro algae.