If the leaks are sufficient to cause the water level in all sections to be the same, it is an issue. Water will flow across the surface, rather than passing through your methods, rendering them ineffective. Despite Bill's self criticism, it cannot be considered OCD (it should be CDO as it must be in alphabetical order...) to pull the baffles and redo them. Once the silicone has been wet, and it is fully cured, new silicone will not stick to the silicone already present so well, and the leaks could reappear down the road at some point.