There is no easy way to do this, in my opinion.  It's the price we pay for having something we only mess with a few times a year.
Take accurate measurements of the current reactor settings.  Bbls per minute of Co2, Effluent volume per minute, alk and pH of the effluent.  THEN >>>>>>>>>>
Shut it down, disconnect it, dump the media, rinse it out and replace media.  I rinse my media in RODI 2-3 times in a small bucket to get rid of all the powder and fine particles and then put it into the reactor.  I also fill my reactor with fresh saltwater before closing it up.
Hook everything back up, fire it up to the same bpm and effluent rate, wait a few hours and take alk and ph readings.  If the readings are even close to what you had previously, leave the thing alone for 12-24 hours, then test your readings again.  You probably will have higher alk than before because of the new media.  Make the appropriate adjustments and repeat in a few days !
PITA but FWIW this is how I do it.  If someone has a better method, I'd love to know.