I have an issue similar to the OP's right now. It is very bad right now. This was caused by a reduction in carbon dosing & GFO in an attempt to get an ATS started. The algae in the ATS never took off, but it sure did on the rocks in the DT. That's not intended as a flame on ATS viability in general. Obviously the one I built sucks!
Now that I've removed the ATS, my plan of attack is to resume carbon dosing, get a little aggressive with the GFO, do some big water changes, AND take the rock that has no corals attached out of the tank and scrub it in dilute peroxide to remove all of the algae. I'll also take out the rock that has corals on it out, but simply scrub off as much algae as possible without using peroxide near the corals.