Just about to move my 29 to a 55g and for new fish going into the 55g I am going to set up a QT and stick every new fish in there before it goes into the display. How long should I quarantine a fish for ( I was thinking 2 weeks) and I need help on choosing some medications to get to treat new incoming fish. No idea where to start on medications, there are so many and I know some don't work well and some are not as safe as they say they are.
Yes cycle for the QT very well.
Cycling FOR the QT can be cycling the QT (as many do usually) or cycling a medium intended for QT. Cycling a medium separately, in a separate container, is often a good alternative to cycling a QT; this way, you can use little water to cycle and then dump all the dirty cycling water.
Copper or hypo to treat ich does not harm nitrification bacteria significantly.
If you do not have concurrent bacterial infection, you would have no problem with ammonia in QT for the long QT period, at least eight weeks of active continuous treatment, to eradicate ich.
Bacteria infection is bad per se; in addition, drugs required to treat bacterial infection is detrimental to nitrification bacteria to varying degrees. I always use UV in QT to reduce the incidents in bacteria infection whenever possible, when I am not using a druig that UV degrades, such an antibiotics. Copper, at least straight copper, is not degraded by UV.
Concurrent bacteria infection in QT when eradicating ich makes ammonia problem more complex, but often one may still manage to have nitrification with an antibiotic that only mildy affects nitrification.