I went 2x400 MH on my 90g and I'm really happy with the choice. I have leathers, zoas and even shrooms happy as can be -- as long as you acclimate them slowly, most anything should be fine with 400s. If you do get something that wants less light, most tanks have a few overhangs and caves; I'm sure you could find a suitable spot.
If the tank is 6' long, I agree you might want 3 MH bulbs. AFAIK a single MH bulb will cover a 2x2' area, so with just two you may end up with some shadows depending on how they're placed.