Aloha Chris,
>>What about zoox. clade, temp., etc. do you think needs to be considered?<<
There are other reasons that colorful corals could have a lower electron transport rate (as demonstrated by various researchers).
Fabricius showed that colorful corals retain less heat than colorful ones. Does this play any role at all? No one to my knowledge has connected the dots on this one.
The zooxanthella clade could play a difference - some adjust to light intensity by adjusting their numbers, some adjust the PSU size. Some are heat or bleaching resistant due to the chemical compostion of the thyllakoid membranes. Color might have nothing to do with their photosynthetic capacity.
>>Well ya, sure, but that is completely different. The ability to sense light and having different sensitivity in the photoreceptors to different wavelengths does not imply differential production of particular proteins. I don't start tanning if I sit and stare in a blue room instead of a green room <<
Smarty pants ;-). The point is that spectrum is often an important part of photochemical responses. I don't have time to pick through the references, so I'll cut-and-paste a partial list - there are some real gems buried in the biomedical literature!
>>I'll reserve judgement until I see strong evidence one way or another, but to this point I've yet to see any evidence or been able to think of any a priori reason that a difference in light spectrum should cause corals to produce more or less of colorful pigments. I'd be most interested to take a look, if you could direct me.<<
Here goes:
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