Furan2 has Nitrofurazone and Furazolidone. It was made to kill gram-positive and gram-negative bacteria. I believe that the filter system (live rocks and sand bed included) has mostly gram-positive bacteria in it. So Furan2 will possibly have an affect on the biological filtration. Just keep that in mind. The quarantine tank became a hospital tank when you added Furan2, since it is now a system with a probably low biological filtration in action.
Some people say that Furan2 won't have any negative effect on the biological filtration system, but any antibacterial medicine will have it's possible intervention on the biological filtration, as we know.
I believe that zoa pox is caused by bacteria, not fungus. By the way, no zoa disease that has a pathogen involved are actually cause by fungus IMO. They could very truly all be bacterial infections.
I aways heard that people dipped their zoas with zoa pox with Furan2 and returned them to the original system without further problems, after the disease was cured. Normally they need to be dipped 2 or more times before the cure.
Hopefully we will hear more reports from others, to find out more about zoa pox's reinfection abilities.
It is so hard to deal with bacterial diseases without using an affective medicine for it!
It's just too bad that we can't add products like Furan2 in a reef tank!!
Every time I've had bacterial infections in my systems there was something going on that twisted the stability of the tank somehow. That's why I aways recommend stable parameters and maintenance schedule to keep the system "protected" from any ups and downs. Normally the immunization system of the zoas is affected by changes that we wouldn't even care much, but they do!! Just remember: our systems are very different then the ocean in many ways.
I would treat the zoas and leave them healthy first, but I don't know if zoa pox can be dormant in the system.
Good luck and keep us posted!
Grandis.