There are several ways to eliminate micro-bubbles in your sump, but as stated above you need to determine where they are coming from. The most common sources are from 3 main culprits:
1. Protein skimmer
2. Low water level or splashing over baffles
3. Exceptionally high turnover of the sump
If your problem is the skimmer, try moving it farther away from the return pump if possible. If it's low water or poor sump design, then you need to take corrective action in that way. If your return pump is overpowering the size of your sump and turning it over too quickly, then you just gotta throttle back if safe to do so for your pump, and if not replace the pump all together.