This is critical.
Until I really understood my RO/DI system, I could never keep SPS. I live in Chicago. The water is very low TDS, but, something in it kills SPS but not LPS, fish, mammals, or inverts. Here is what you need to do:
1. Make sure your pre filter is changed every 6 months.
2. Run TWO stages of carbon before your RO, and change them every 6 months with your pre-filter.
3. Make sure your waste / product ratio is between 1:5 and 1:7. Down to 1:4 if you live in a Desert state.
4. Consider a pressure booster at the source.
5. Run an inline TDS monitor. My product is ZERO TDS. When it gets to 2 or 3 - go back to step 1.
5. Do not run your RO DI system directly to you Auto Top Off. The constant on off cycles screw up reverse osmosis membranes. I have a RO DI reservoir that I use both for top off and making new saltwater. It fills on a 12 hour timer into a 60 gallon vat, which reduces the on/off stress from the ATO.