No need to ask for patience, this stuff can be confusing and we're here to help each other. I've got over 30 years messing with RODI so, I've learned a lot...mostly from people on here over the years. So, when I can return the favor and help someone out, I'm happy to do so.Please be patient as I'm trying to figure this out So the flush valve (green arrow) is always open it looks like. Should that valve only be open when I am flushing the membrane then closed and the waste water valve (yellow arrow) be open when I am making water?
Yes, the flush valve (green arrow) should only be open when flushing the membrane. Having it open all the time would likely answer why your pressure drops.
So, in summary, flush valve (green arrow) open ONLY when flushing the membrane. Then close it when you're ready to produce water.
The other valve (yellow arrow below) can be left open all the time, IMO.
Try that and let us know how that works.