If it sucks up all the water when both pumps are on simply add more salt water until the level in the back corners isn't so low. Preferably the water level will be even with the next chamber over or have only a slight waterfall into the corners. Maybe 1 to 2 inches.
If you added a lot of sand expect it to take up to a couple of days to become completely clear.
I'd hold off on adding chemi pure and purigen until you're done cycling.
At the risk of sounding like the message board police...I'd highly recommend that you do some research here. This board has all the answers to any question you could possibly think of. Do some searches and you'll find great info about filter media, cycling your tank, water changes etc etc. You'll definitely want to do a bunch of research before adding any livestock. Plus you'll have a blast reading through everything.
Trust me, doing research now will save TONS of headaches, heartbreak, frustration and money in the long run. Some of your questions should have been addressed before your tank ever saw water. Not trying to be a jerk or discourage you, just being honest and trying to help. Good luck and I'm sure if you research and do things right you'll enjoy it for a long time and have success.