Firstly algae do not have roots, they are for attaching, and they look like roots, but are not. Just weight it down gently here and there and it’s all good. Do that in sections all over the mud area. Personally I wouldn’t use miracle mud in that way, but that’s up to you. In mud they make like a netted bulb that holds on by its volume and not like actual roots.Do not have the floor the algae will attach to any deeper then 8 inches under water and the lights, 4 to 6 inches off the water with no bubbles bursting.