Tanks don't have the space, diversity, food webs...basically the ecosystem required to support a community of tightly recycled nutrients the way the ocean does. If you're trying to recreate the coral reef, I hope you're dumping several pounds of plankton into it every day, because that's the amount that flows over the same volume of reef as your tank. I know all about herbivore exclusion studies - I even did a paper on the subject. I'm glad to find out that my tank isn't a very accurate representation of a coral reef because macroalgae won't grow. Boy, the corals don't mind, though....I obviously don't have high enough dissolved nutrients or the detritus required to grow macro.....as I sit here wondering in what way I'm "failing"....
I'm afraid maybe we're misunderstanding each other a bit. Reeftanks, by their nature, are artificial structures. I think a goal for most reefkeepers is to recreate the conditions and appearance of a reef as much as feasible within cost and labor constraints. As such, there are always aspects that manifest that aren't realistic of the natural reef. If benthic algae isn't constrained by herbivores then a tank isn't modeling the real system. This isn't necessarily a bad thing, and I didn't mean to imply it is a failure per se, but the tank is not replicating a coral reef in some very fundamental ways.
Also, nutrients are recyced over a very broad area in nature encompassing many distinct ecosystems. Thus, coral reefs (at least a typical forereef and/or reef flat) doesn't totally recycle its nutrients. In fact, they barely do. The nutrients are recycled through tight coupling of the reef/lagoon/seagrass/mangrove/near oceanic system where some pelagic, but mostly benthic processes are paramount.
Yet our tanks are well oxygenated in the upper sand layers? Most sand that I see used in tanks is not much coarser than muddy sediment (Southdown, etc).
It's a bit odd to be totally honest, and not expected. There isn't nearly enough data on reef tanks to be certain that all or perhaps even most of them are oxic thoughout, but the sandbed "study" that folks did with Dr. Shimek seems to suggest it. As for why that is, my guess would be that there is relatively less being decomposed in our sandbeds than in a similar section of sediment in nature.
There are organsims that are transient though the anoxic sediments, but I'm not aware of many animals that respire without oxygen present. Perhaps you can help me out with that? Bacteria - sure. But I must plead ignorance to the multitude of non-bacterial species that you claim live in anoxic conditions.
Any sort of infaunal or meiofaunal organism. Mostly these are various worm phyla, crustaceans, forams, ciliates, molluscs etc. Usually they pump water from above (oxic) so they can breath or utilize anaerobic metabolic pathways. The Invert. Zoology textbook by Brusca and Brusca is the classicly used text for invertebrate phyla, if you're able to track it down. You should also be able to find more info. on marine in/meiofauna in a marine biology text, e.g. Nybakin's.
Lots of the bacteria there are something I don't want thriving in my tank, either. Maybe if my tank was an estuarian habitat or mangrove mud flat, but my tank, despite your reluctance, is indeed quite hospitible to the corals - and that's why the tank exists.
Sure, couldn't agree more. Too many bacteria is bad. Usually the conditions that foster that are a large abundance of labile detritus (doesn't happen unless someone is seriously, seriously overfeeding) or very low water flow for some bacteria (now good for the tank anyway). If the tank has low waterflow and you're throwing in a handful of mangrove leaves everyday, you'll probably get something more like a mangrove than a reef. Although I will also point out that some corals are really common in mangroves
I also never meant to suggest your tank was inhospitable for certain zooxanthellate corals. I don't think live rock is necessary to keep many of them alive and grow them, but I think in the context of a reef tank, with fish, corals, and various other invertebrates, it would be much more difficult to do so without the biotic mediation live rock provides.
All I can say is that it is painfully obvious that you haven't run a tank "the other way". I feed as much as the next guy - for sure. My "sterile" tank blows any other tank I've had away. But I don't expect you to take my word for it. Then again, my main objectives are keeping corals colorful and growing - not building pseudo-"food webs".
I do have the privelage of knowing a few people that have been in the hobby 10+ years and have run tanks many, many ways. I've also had the opportunity to see tanks run many ways. From what I've seen and through talking with people that have tried it all it seems to me that tanks with a moderate amount of live rock, a sand bed, have a solid infaunal/meiofaunal population, get fed well, and usually (but not always) have a strong method of nutrient export are the most successful and the easiest to keep. They also seem to be closer to nature, at least they look more like the reefs I've been to than systems that deviate significantly from these conditions.
e.g. The production of most any type of planktonic food, especially below about 10 um. Nitrification-denitrification biofilms. And why wouldn't anyone have these in their tank? Because "anyone" does.
I don't follow.
Yeah, by all the DSB crashes we've seen in the past few years. Whatever
Well, a couple of things: 1. what is a "deep sand bed crash" really? 2. if there is something wrong with deep sand beds, something inherent, why don't they all crash? Why are there so, so many really great tanks with sand beds? e.g., Joe Burger's tank. 3. you've never seen a person with a shallow sand bed, or no sand, kill things? Tanks "crash" and animals die because we as aquarists make mistakes, or because of good 'ol Murphy's law. Fish, corals, and many other animals can be kept in tanks with all sorts of bottom coverings. What does that have to do with live rock though?
That means you're putting more energy in and since you want to farm everything and tie up this increasing amount of food in organisms, it stays in your tank. It simply amazes me how "natural" reef tank keepers seem to think that nutrients like phosphate are somehow magically eliminated from their system.
Sure, we put food into tanks specifically for the purpose of keeping some of it there in the form of growth in our animals. Of course one has to remove these nutrients at some point...unless there is an antimatter generator installed

Carbon in food added to the system is lost as CO2 (mostly) or deposited as CaCO3 (mostly). Nitrogen is put into tissues or sunk in CaCO3 matrices. Some is undoubtedly gassed off as NH3, N2, N2O, etc. Whatever is left is removed in skimmate, harvested algae, water changes, activated carbon, etc. Phosphorus is put into tissue, sequestered in CaCO3 (mostly) or removed with skimmate, algae, activated carbon, etc.
In a tank with a fish and nitrifying and heterotrophic bacteria, all the N and P in the food will end up dissolved in the water. With the same fish and food but some rock and sand with detritivores, corals, coralline algae, etc. a lot of the N and P in the food ends up as growth in these organisms or sequestered geologically. In the first case a lot of N and P needs to get removed. In the second less needs to be removed.
What amazes me even more is that people think they can operate their tank like it's an ocean. You go ahead and tie up all those nutrients in your system - heck, even export a little algae for good measure. I'll keep them from becoming biomass by skimming heavily and settling the bulk of detritus in my sump where it can be easily dealt with - and removed. Skip the middleman...it's actually easier than growing algae.
Ok, go ahead. No reason you shouldn't run your tank this way. Of course, with the same degree of maintenance, some good rock, a sand bed, and maybe a refugium a lot of folks get similar good results with their fish and corals, but also have the pleasure of growing things like sponges, ascidians, feather duster worms, etc. I've yet to see that properly maintained barebottom tanks are in any way less maintenance or more likely to grow healthy fish and corals than tanks with sand, rock, and a refugium. They both seem to do these. The latter, however, seems to also provide a hospitable environment for other reef animals while the former seems less able to do this IME.
For the record, I think you mean subjective. If it were objective, we wouldn't be having this "debate". To be objective is to be free of bias...
That's probably why I shouldn't type when it's late and I'm exhausted
Best,
Chris