The first response usually offered to eradicating cyanobacteria is to increase flow in the aquarium, reduce feedings, and check the age of the light bulbs in use. While this advice may help some, it isn't the blanket cure for the majority of systems. Hobbyists with excellent husbandry skills may still encounter cyanobacteria from time to time. Could it be overfeeding, a lack of water changes, or dosing carbon-based products? Perhaps it was all of the above, but in reality what has happened is that everything fell perfectly into place to create a "œcyano bloom" where previously one had not occurred. This type of bacteria was already in the system, waiting for the conditions to aggregate to the point that it could finally rear its ugliness as a reddish mass, much to the dismay of the hobbyist, seasoned or newly involved.
Siphoning out all that is visible is a good way to reduce its volume in the aquarium, but it won't get rid of all of it. Brushing it off with a tank-only toothbrush may help, and keeping the protein skimmer working at peak efficiency is another good plan. Trapping any bits floating about in filter floss or a filter sock can help reduce its physical presence too.
a simple method is to simply turn off the lights over the aquarium for three days3. If the reef tank is primarily made up of soft corals and fish, proceed without fear. If the tank contains large polyped stony corals (LPS), anemones, and clams, this method is still a safe choice. If the tank contains small polyped stony corals (SPS), there may be reason to pause to consider if the livestock can tolerate 72 hours without light. Several people, including this author, have left the lights off over their SPS-laden tank and were very pleased with the amazing results. What happens is the cyanobacteria is starved without a light source, and thus dies back sufficiently that when the lights turn on again, it is gone. An additional perk is that the water clarity will be incredible; all four walls of the aquarium are completely clean of algae, and the sand and rock will be cyano-free. The protein skimmer should be cleaned out daily, especially on the third day because that is when the die-off will be exported quite heavily.