Yep, I've had that happening here and there also.
I believe the tentacles are retracted, not "missing".
The zoas keep their discs open and the edges look white.
Some times it happens on the whole polyp, sometimes only part of it.
Some times the polyp keeps it's size, some times they get very tiny.
Could be microscopic irritation.
That is also caused by vermicide snails and some nocturnal worms!!!!
When not by vermitids/worms:
I've tried Lugol's and it doesn't make any difference... No changes...
When it comes back to normal takes a while...
No water chemistry changes.
No predators.
Nothing visibly touching the polyps.
No corals in the system.
Fishes don't touch them either.
Does anyone here knows what causes that?
Grandis.