I have to agree with Bill on this one. While very possible it would require some pretty high end equip, like NatGeo high end... A serious macro lens would be needed, but the focal point on the macro is such that you would really need two views, one wide shot looking out at a "cloud" of plankton, or one close up showing a plankton scurrying about. The problem is that in open water the focus, lighting, water movement, camera movement, would all have to be timed perfectly. A more plausible scenario would be a video shot underwater with said macro lens that then focuses down and follows a plankton. That said you can do that in a Petri dish in a lab.
While a cool idea, and very possible, what your suggestions IMO, sounds like a huge amount of work for very little return.