I am taking the same approach. Here is a drawing.
Display is 90 X 48 X 30" high. Skylights with active tracking mirrors are 48" X 48". There are two of them.
There will be some shadows for sure due to the rails and pendants. I am going to use the smallest pendants available but I might even have to go with a bare bulb.
With a tubular skylight one surprising feature is that when there is no diffusion lens or a clear lens, an object placed in the CENTER of the tube does not create a big shadow. Most of the light is being bounced down the tube and in effect there are multiple point sources many of which come from the EDGES of the tube opening.
Some manufacturers sell kits to mount supplemental lights inside the light well. You would then need the optional ventilation kit or multiple ones to controll the heat issues within the tube.
Another issue is distance since any halides mounted in the tube would be considerably further away from the water surface and therefore lose a lot of intensity.
For smaller tublular skylights, one 400 watt 20K pendant mounted inside the skylight might do the trick.
Now the final detail would be to design an extension tube that allowed the distal portion of the skylight to telescope upward. This would allow access to the tank surface when needed and get the aperture of the skylight very close to the water surface and therefore provide much more intensity from both the halides and the natural light.
Again this is what I had originally wanted but as things progressed it started to look like it could become a nightmare to work out all the details mainly because my skylights are so large.
I will draw a quick picture.