Just to make sure it is in fact Diatoms you might want to get a brush and see if it comes off the rocks fairly easy. If not it might be another type of algae. Unfortunately I can't remember the name of it right now, but it does start off as small brown spots like that.
Thanks guys, they don't look like diatoms, I had diatom bloom in the beginning of the cycling but they went away after I introduced cucs.
The tank was setup in Aug so it has been a while and the brown algae are not going away nor expanding. Now the purple coralline algaes are started to grow on the rocks too so I have lots of colorful dots on my rocks
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