If its Dinos you are experiencing in the tank, I can say that I've had Dinos a few times over the years. Twice before I gave up and broke the tank down. I had the Dinos confirmed as I took photos with a microscope and posted on RC and had it confirmed by a member who is an expert on Dinos. I knew what they were, but wanted to be sure.
I got Dinos again some months back after 4 anthias died in my tank within a week or two apart and I wasnt able to remove them because they ended up under the rcoks.
This time I let things run their course. I think they persisted for at least 3-4 months. A reefing friend who saw my tank last week asked why my sandbed is brown and ugly...

Anyway, a few days ago the Dino suddenly disapeared!
I changed nothing. Carried out the normal maintenance etc. I resisted starting over or removing the sandbed etc.
If you read up on Dinos, there are many variants...and this is why some methods work and some dont. Eg Ph/blackouts etc.
If you can ignore it and wait it out, I would; as long as your corals arent affected.
EDIT: I did end up removing my chaeto bed...due to the light spectrum (and possibly flow) )in the sump the Dinos were crazy in the sump and grew all over the chaeto etc.