Clownfish will often dig, it's just a way of them cleaning and organising their home. Don't be surprised to see them move small rocks/shells too.
If they are digging too large a hole. Put a white tile about 1/2" below the sand. Once they clear the sand away to the tile they will be happy and stop digging around it.
Our clowns will dig 2-3" holes quite happily and make a great mess given the chance
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