The 6055 is a smaller pump and as such will always be quieter, there is less moving mass and less possible vibration.
25% could damage the pump, acceptable settings are 30-100% and 0% or off, 1-29% are not recommended as the pump can overheat and stall.
I will list every possibility below:
1) The controller is likely part of the problem, we make our controllers to ramp up in wavemode (7092 and 7096) and this eases the magnet down on start, which avoids the slap of the magnet hitting the base of the pump and I know of no workaround for other brands of controller. Basically over a fraction of a second the pump accelerates from 0-10% and then jumps to 100%, this happens over about 1/10th of a second.
2)The propellers could just be stiff, for the first 2 months parts are wearing in, over half of this wear in occurs in the first 2 weeks. Pumps usually get quieter in time.
3) If a pump is in a corner or the cord is against a hard surface, reverberation noise against a side pane or items in contact with the cord will worsen noise issues.
4) If the front housing is not fully engaged it can vibrate as well, make sure the gap is even and all tabs are engaged.
5) It is possible the drive magnet/propeller has some sort of blemish or defect, in general a few weeks of use will remove small blemishes.
6) if the pump was dissassembled and cleaned it could be the disk was accidentally lost or removed or improperly reinstalled- part 3005.740. This disk should have the blue cup at the very bottom, the magnet spins on the slotted side of the black disk.