I think moderation is always key. Like anything I suppose it's possible to feed too much, although I think it would take a lot live phytoplankton to clog the gills of an animal evolved to consume it.
However, I think the Fatheree mention in that thread is important to note. You have to be careful when making overall generalizations about different species. Although similar, a Maxima is different then a Crocea or a Squasmosa and they all have varying growth rates and needs, however illnoteable.
There are obvious stressors related to bowl feeding clams, although I don't believe the feeding itself is one of them. Unless of course your feeding the clam something it doesn't like. I would only recommend feeding live phytoplankton. Intuitively it makes the most sense (since that's what they feed on primarily in the wild) and its been utilized the most in the hobby. I wouldn't recommend using freeze dried phyto. The clams may gain some benefit from it when dosed in the tank but I wouldn't risk it with such high concentrations in a feeding bowl. It clumps, its dry, and it's dead. So, I imagine it could irritate a clams gills at high concentration. Tridacnid clams will not benefit from Cyclopeeze or oyster eggs these food items are too big for them to utilize. They feed on primarily phytoplankton and some bacteria.
I think the only true stressor is the constant moving of the animal. The clams I have either sit in the sand bed or are attached to a small piece of LR. I'm sure there are benefits to allowing them to attach to a solid hitch but I prefer not having to risk tearing their foot when moving or inspecting them for parasites. In order to minimize stress, I usually transfer them to the feeding bowl inside the tank. This way the clam never even leaves the water. I also leave the bowl propped up at the surface of the tank so that there is no temperature change while the clams are feeding.
Good Luck