Looking like a great start @bif
So Kevin -- I had the same problem as you, but in a slightly smaller tank. (Biocube 29g), my skimmer wasn't skimming but nasty would build up in the neck (that's still being taken out of the water... so it may not be filling to cup, but it's doing it's job), the corals grew stagnant and pale eventually, some became a little brown.. But mostly pale.
My Nitrates and Phosphates were ALWAYS 0. Always. I decided my tank was too sterile, and started feeding a LOT more... Nothing. A month later I started dosing Nitrates. I could probably find the recipe from Randy Holmes -- But basically i took a Liter of water, and mixed in FW Nitrates (Planted tank Ferts, forgot how much exactly) to get my nitrates detectable. The dosage recommended per Randy was 1ml per 2g to raise Nitrates by .8ppm. It took a week of dosing to get my nitrates to 1, and I was pouring in .8ppm nitrates PER DAY.
A couple things happened -- My skimmer started skimming, my bacteria started taking off, and all my colors started improving. Since then my nitrates have been at 20+ and my colors have been improving slowly (except for 1 or 2 stubborn SPS).
I also started Micro E, only 4 days ago, and it's already making a teeny difference. But because of this I can no longer tell how much the nitrates are helping -- But they help.
Assuming your Nitrates & Phosphates are still 0 -- You could try turning the skimmer off for a day or two, or you can start dosing nutrients. If you don't want to mix Nitrates / Phosphate ferts then you can get Brightwell Aquatics FaStart-M -- It's a pre-mixed nutrient solution that will dose nitrates and phosphates. When you dose N03, p04 drops. When you dose p04, N03 drops. This mix has both.