I'm not sure if you can run two siphons or not. To me, since you control them with gate valves, you should be able to do it... BUT you'll have to make sure that your other drains will be able to handle it if they were both to loose their primes and if you slow them both down too much then you could loose the flow rate and loose the reason to have 2 running at 45% rather than one running at 90%. And how much flow are you looking to have in your tank? I don't have a link but there is a good thread on here about the Bean Animal that shows where the 1" drain could handle as much as 3000 gph. Seems to me that you could achieve all you want with one drain, possibly increasing the drain size if you desire a high flow rate and would be less worry.
Good Luck
Mike