I am having a hard time picturing this... your question is concerned with a siphon tube, but you described a sump. Can you share more about your system, display tank size, volume, type of HOB overflow.
The bubble can be bad if it increases in size, and this is likely if it appeared on its own. This is sometimes caused by having the siphon tube too low in the prefilter box, causing the opening to bottom out.. obstructing flow. Try lowering the inner box or raise the tube 1/4" by putting an eraser under the "U". There are other ways to mitigate this by installing an aqualifter pump to the top of the siphon tube and sucking the air buble out (continuously). I would make this a last resort.