Let's get some things clear:
1) Hypo is not a treatment for Black Ich:
http://www.petsforum.com/personal/trevor-jones/blackich.html
2) Live rock through a hypo treatment will kill the pods, inverts, worms, and other good small animals and lifeforms that have come to your aquarium on the live rock. If you treat the live rock with hyposalinity, you will, in effect, turn the live rock into base rock. Is it worth losing the valve of that live rock and all those lives?
3) The beneficial bacteria may well live and usually do, through a hypo treatment. But sometimes they go into stasis, or hibernation until they can adjust to the new salinity. So you'll need to anticipate the need for frequent water changes.
4) If they have Marine Ich (
Cryptocaryon irritans) then a hyposalinity is one of the right treatments for that. As far as I know you can do formalin treatments to fish in a hyposalinity.
Be sure of your diagnosis to make sure you are giving the right treatment(s).
