A few things:
1. No one knows why there have been population explosions over the last few decades. It seems that this is not, I repeat not, unprecedented in the historic record. However, it does appear that the frequency of these blooms is unprecedented, at least in the recent past. Many hypothesis have been offered but there isn't a concensus yet. It may be a combination of factors. The one thing that is generally agreed upon is that some human activity or group of activities has increased the frequency of blooms.
2. Of course we shouldn't wipe them out. Perhaps controlling their population would be prudent, but wipe them out? What if it turns out that a massive COT outbreak every millenium or so is necessary to keep reefs diverse and that by killing them we have quite literally doomed coral reefs as we know them? Destroying a species is never, never, never an option.
3. Sure we can argue that humans are a part of nature and that what we do is natural to escape responsibility, but what does that matter? We are the one species that has ever existed that can completely transform its environment and so-doing jeopardize its own existence. To be quite blunt, we do not avoid damaging coral reefs because human activities are in any way unnatural, we do it because we benefit from the fact that reefs exist. Any environmental damage whatsoever lowers our standard of living. Ultimately the existence of civilization and economics is solely to raise the standard of living of the participants.
I mean, if we're going to argue that, it is perfectly natural to go club some woman and drag her to my cave (though cave people didn't really live in caves...you get the point). Then I'll skuttle off and kill some other group of folks, since I've got better weapons, and take their land. Well, I'll probably keep the women around... Sure, I could do these things, but I don't because I think they're wrong and our society has agreed they're wrong. If I try to do them I will ultimately be caught and punished. Aren't we as rational beings above our basest interests?
cj