Having dipped in FW for Zoo eating Nudi's, I will say this - do NOT dip mixed rock (i.e. rocks with multiple types of coral other than zoos) in FW.
I lost several colonies of Xenia before I found out how sensetive they are to FW.
Also - in the "rinse and shake" part of Mucho's Zoo dip, don't do this on mixed rock that has fleshy, "breakable" coral on it (i.e. big mushrooms, all SPS, and the aforementioned Xenia).
Edit: however, it should be noted that after a while of my trying everything and anything to get rid of these little punks, I eventually said "to hell with it," and fragged off a few "Hail Mary" frags that I put into a QT tank, let the nudi infection go for as long as it wanted, and let the nudis die off naturally. I then reintroduced my zoos.
This obviously would not be an acceptable solution if your tank is heavily grown over with Zoos (I think I had like 5 colonies with 20-30 polyps each - they were pretty new).
Now I always examine my new Zoos thoroughly and dip before they go into QT. Then I dip them again before they go into the tank.