Hi Tanged,
i have a similar setup with 20 gal and a 40 gal tanks both draining down to a 20 gal sump and then back up. so a dual qt system. anyways no its not a good idea to keep rocks and sand in qt. If you ever had to treat with medicine most will be absorbed/lost in sand and rocks making treatment a bit more difficult and at some point rocks and sand can leech that stuff back as well.
Its best to replace the rock with ceramic media and rid sand.
i have a similar setup with 20 gal and a 40 gal tanks both draining down to a 20 gal sump and then back up. so a dual qt system. anyways no its not a good idea to keep rocks and sand in qt. If you ever had to treat with medicine most will be absorbed/lost in sand and rocks making treatment a bit more difficult and at some point rocks and sand can leech that stuff back as well.
Its best to replace the rock with ceramic media and rid sand.