I agree with hahnmeister. You weren't clear what your objective is. Do you have a nuisance algae problem, or are you trying to promote pro-biotics like coraline algae and incrusting invertebrates? The two goals have separate courses of action to achieve them.
The first ââ"šÂ¬Ã…"œnatural reef aquariumsââ"šÂ¬Ã‚ were created by Lee Chin Eng, in Jakarta, Indonesia. They were introduced to North America in the February 1961 TFH article, written by mr. Eng. They havenââ"šÂ¬Ã¢"žÂ¢t come that far since their inception. Remote refugiums were around in the sixtees as well. The use of natural light is another idea that got lost somewhere along the way. We had 40 years of highly mechanized aquarium systems before the idea has come full circle. I hope we get it right this time.
I agree with the idea of removing your fluidized bed filter. Not because of a belief that it generates residual nitrate, but because I feel it is ineffective at providing a suitable site for nitrifying bacteria. It would be redundant in doing so anyway. Your live rock (healthy or not) and substrate are a far superior home for nitrifying bacteria.
The idea that biological filtration media is singly capable of adding nitrate to your aquarium is a myth. Man-made biological filtration is redundant, but not harmful. Nitrification is carried-out on the surface area of live rock and sand in captive reefs, just as it is in nature. The logic that would require the removal of biological filtration, would advocate for a rock and substrate-free tank.
The function of bio-balls and fluidized beds in captive reef systems has always been highly debated. Companies like Dupla convinced us, with high gloss ads and beautiful packaging, that they are extremely efficient sites for nitrifying bacteria. Science however, has proven otherwise.
The only scientific testing that I have found with regards to the efficacy of biological filtration media proved the following. An eight-inch deep column of crushed coral was conditioned to grow a viable colony of nitrifying bacteria. A measured amount of ammonia was added to the column. The ammonia was converted to nitrite then nitrate (nitrification) as it traveled through the media. The effluent water was ammonia and nitrite free.
When the same experiment was carried out using bio-balls, it took a forty-foot column to achieve the same result. This was a controlled experiment that is repeatable. The experiment proved that surface area is more significant than void space.
Another experiment was carried out where they counted the volume of nitrifying bacteria on granules of gravel. This study proved that 90% of the bacteria lived on detritus on the gravel rather than on the actual pores of the gravel. Porous biological filtration media (gravel or ceramics) only provide more area for detritus to attach, so bacteria can, in turn, attach to it. Bio-balls have a lesser amount of surface area for detritus to form and therefore provide a poor site for biological film to populate.
It takes three weeks for nitrifying bacteria to develop on a site. A biological film first coats the detritus on the media. Then layers of bacteria start to grow on top of each other. The site grows to a critical mass and reduces nitrogen compounds to less toxic forms. After about three weeks the biological slime coat becomes too large and unstable for the site. It sloughs off and leaves a fresh location for the process to continue the cycle. As one site rises, another falls, maintaining a stable colony over all. Fluidized bed filters are not conducive to this life cycle.
A process called "wash-off" occurs when fast moving water passes through biological filtration media. The force of the water pre-maturely removes the biological slime that houses nitrifying bacteria, rendering it void of filtering capacity. Biological media in wet-dry filters and fluidized beds will be devoid of detritus and biological slime due to wash-off. Live rock and substrate are a more stable location for autotrophic and heterotrophic bacteria, due to the lack of wash-off.
The nitrogen cycle starts with nutrient import (feeding and water changes). Proteins such as urea, amino acids, and phenols are converted to ammonia through a biological mineralization process known as deamination. The proper use of chemical filtration such as protein skimming, ozonation, UV irradiation, and physical adsorption (carbon, ion exchangers, polymeric adsorbents etc.), will only minimize the nitrification process.
Nitrification, and the subsequent residual of nitrate, is a biological process that is constant and as unavoidable as taxation. Nitrifying bacteria will flourish if there is an abundance of food, namely ammonia and nitrite. If your system is in flux, you will have excess organic nutrients. Nitrogen compounds will build-up, and a residual of nitrate will be an available nutrient for nuisance algae.
If you canââ"šÂ¬Ã¢"žÂ¢t limit your nutrient import (feeding), you need to focus on your nutrient export (assimilation and removal). This can be accomplished through the employment of denitrifying bacteria and the careful balance of flora and fauna (bivalves, macro-algae, sponges, polychaete & serpulid worms, barnacles, tunicates, copepods, amphipods and other benthic invertebrates). The harvesting of macro algae growth is an excellent form of nutrient export. The secret to success is the ability to get attractive flora and fauna to out-compete with nuisance algae.
Lee Chin Eng proved, forty-five years ago, that even without mechanized filtration, water quality can be managed through the replication of natures balance. A healthy collection of corals and macro algae will reduce organic waste and balance captive reef ecosystems. Many successful aquariums are maintained with only water pumps, natural light, and proper livestock selection.