Is there more water in the tank then before to raise the amount of water that Is getting to the skimmer. I am not sure what type of skimmer that you are using but I know on my recirculating skimmer before I had the ATO I had to watch the water level in the sump cause the higher the water in there the higher in the skimmer. Also if your skimmer has a venturi valve try turning it down a bit.
Your new water you added will much less DOM (dissolved organic matter) This is what the skimmer pulls out. When I do water changes ill dial down my skimmer for a few days or even turn it off. This will depend on your bioload, but you can go skimmless until your water is "mature".
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