One thing I thought of when going through your pics. What made you change your bulb combo around so much? Although the color in pic 5 is great, I have a feeling the bulbs are producing alot less PAR(unless there was another bulb change between 5 and 6), than say pic 3(or what ever bulbs got you to pic 3). Cameras mess with the white balance, so a dim pic can come from a bright tank or vice versa. If you can, borrow or buy a Apogee meter and check out your PAR readings for the various bulbs you have, and put the highest on. If you can't do this, go back to the bulb combo you used to get to pic 3. It obviously was strong enough to grow it out thick enough
If it isn't a PAR related issue, then you may have stressed out your coral from just changing your bulb combo around, and it having to adjust. Sometimes in our best effort to make things better all the time, we'll make things worse by stressing an otherwise happy system, out.
Do you dose both(calcium and alk) every day? Most 2-part programs are one, one day, the other the next. What is you alkalinity just before lights on and just before lights out? What test?
Replace your pumps for fewer, more powerful pumps. Your 4 different "pumps" are fighting against each other, slowing each others flow. Although this increases turbulance, it reduces the "torque" needed to get deep inside those branches. I really don't like those nanos. We have them in some small fish only tanks at work, barely blow flake food around. Also, it's hard to judge how much water is going through a skimmer. Depending on how much air is flowing with the water, you could have less than 50% of what you expect.
I still think it's flow.