Hi Dave,
I just read your thread.
You may recall I posted on the bio pellet thread when you first had difficulty getting them to reduce your nutrients and didn't feel they worked at all....
I ran 10L bio pellets In my 1000G system for a year and had similar probs with SPS.
I gradually halved my pellet volume, then halved again because I realised my nutrient levels were just too low. I was also heavily feeding coral foods, which were brightening up my corals, until bang, I got cyano. This was prob from cutting the pellet processing, whilst not reducing my input.
I stopped the coral foods, but continued to halve the pellet dose every couple of weeks and everything came back to complete health. I was running about 2L for a while and everything was fine, but I eventually decided to stop them altogether. I continued to monitor my nutrient levels, but they stayed very low and my corals looked great. I'm guessing the large number of corals started to deal with all the nutrient processing.
I have 9x400w halides and 12x T5 tubes over my tank. Cyano returned in small amounts as I was feeding quite heavily, so I added more flow in the back of my tank, more dove and nassarius snails and conches for the sanded and did weekly GFO change out with weekly water change 10% and siphoning. I removed my sand sifting starfish and also added some chaeto in the sump, but it grows very slowly at the mo'.
I think the underlying problem is the amount of pellets you run. A really cheap simple thing you can do is halve your pellet dose and see what happens for a few weeks. If your nitrate doesn't shoot up, halve again.
If phosphates become a problem, you may need to run GFO ( if you don't already).
I know they say you can't overdose on pellets, but trust me, you can!. Just so you know, I was running from the test batch of the first pellets that came to market. I started pellets in my system more than 21/2 years ago, so I have a lot of first hand experience with them.
I also tried running zeo with them, but just couldn't get the dosing right and kept getting algae blooms. These stopped when I quit the zeo dosing and pellets.
I made no major adjustments to the lights at that time, so had pale corals for months that suddenly came back to life with intense lighting.
It has been mentioned already, but the issue is zooxanthellae expulsion due to nutrient starvation, that then can't process whatever light you throw at the coral. Get more nutrients in( ie cut pellet dose). And the zooxantheallae will repopulate the corals and you'll be back on track...
Mo