I have been told you can cover them with Kalk paste and that will kill them. I would imagine a week or two in the sun would do it too. I would not bet on the freshwater bath, however.
I recently had a bad outbreak in my 30 gallon tank that killed off a nice rock covered with zoas. I ended up actually taking the tank down, (I also had an aptasia problem going) and re-cycling the tank with all new live rock.
That worked, too. I simply vinegared out the tank and started over.