Slot pipe clog prevention
This issue is brought up on a pretty regular basis. Obviously, no one wants an overflow pipe to clog and overflow their tank. Most people take precautions to prevent livestock from entering the overflow pipe, such as an intake screen. In the case of the scrubber, they’re worried about the algae growing thick enough to stop flow at the point where the screen and pipe slot meet.
Almost without exception, this question is posed by someone who studies the design, but has never actually built or operated a scrubber for any length of time. I’m not trying to belittle anyone posing the question by saying that, rather just making the point that if you run a properly built scrubber, you’ll understand that this is really not a concern. Here’s why:
If you properly build and maintain a scrubber, there is virtually no chance that algae will grow thick enough to block the slot. I’m not saying that algae will not grow at the junction point of the slot and screen, it most certainly will to a certain extent. The water on the screen below the slot will get partially diverted over the top of the algae mat, as water takes the path of least resistance. As you approach the slot, the flow area is restricted to the narrow space between the pipe slot and the screen. This creates an area of flow pressure under which algae cannot grow to any significant thickness without succumbing to the pressure of the flow and releasing from the (smooth) screening material. Proper cleaning of the slot and the smooth portion of the screen during weekly screen cleanings virtually eliminates any chance of the slot clogging.
As for the interior of the overflow pipe and slot pipe, these can be clogged by variety of means. The most obvious of example is a snail, anemone, or other tank mate that makes its way down the pipe. This is a potential problem for any overflow pipe, but adding a slotted pipe with a cap on the end just makes some people nervous, because there’s no place for that obstruction to exit the overflow pipe. Fortunately, this is only a problem when you insert the screen too far into the slot pipe. If you only insert the screen far enough that is extends about 1/8” to ¼” above the inside of the pipe, then anything that makes it all the way through the plumbing to the slot pipe will get pushed to the end of the pipe by water pressure, and should only partially block the flow, and only at the end of the screen, if at all.
If you insert the screen all the way into the slot until it contacts the inside of the pipe, the obstruction could form at the beginning of the slot tube, and could substantially or completely block the water flow. However, this is perfectly fine as long as the inlet to your overflow pipe has a strainer on it that would prevent anything from entering the pipe.
I don't know if there is any advantage to full insertion vs. minimal insertion. Inserting the screen further into the slot pipe may even the flow out a bit, but I haven't noticed any glaring issues with the way I do it. This is why I recommend inserting the screen such that it protrudes no further than ¼” into the interior of the slot pipe.
With all that said, if you’re still concerned about the issue, and don’t want to take any chances at all (and you would be hard pressed to find someone to blame you), then there are a few techniques that can be implemented that will reduce or completely eliminate the chance of a blockage of the slot pipe causing your tank to overflow. Notice that I only mention a blockage of the slot pipe. This is because a blockage of the overflow plumbing before] the slot pipe is a totally different issue, but some of the solutions below will apply to both.