I don't know if the coloration issue would necessarily be related to phosphate, most of the "heavy SPS" threads that I have read use pretty aggressive filtration and their main target is low phosphates. That at least has been all the rage since the advent of GFO, but now there is some pushback on this thought process that I am seeing.
What may be at play here, depending on your coral stock, is some kind of allelopathy from the algae that you do have growing. The type of growth you are getting (brown) might be playing chemical warfare with some of your corals. Are you running any activated carbon?
Because of the possibility of this type of chemical interaction between algae and SPS, I have been recommending that you run at least a small amount of activated carbon. Some have had no problems with scrubber only + SPS and others have said they have better success when running scrubber + skimmer or scrubber + GAC, or all 3.
If you are feeding, and you have fish in the system, and you are not running any aggressive phosphate reduction media, chances are you have enough phosphates in the system to sustain whatever growth you want....this is why I'm thinking that it's something else going on