Generally speaking, yes. But how you do it will depend on the type of drain you have. If it is a full siphon, then yes, an inch or two below the surface will be great. If it is a Durso style, then I would suggest that you add a "T" to the drain so that the "leg" of the T is just above the waterline. This will allow the air in the line to escape decreasing the noise and salt spray.
hth