I have the JBJ brand skimmer that is designed to go with this tank on my 28g. I dont recommendt it. Setting the height of the cup relative to the water level is nearly impossible, so if the wavemaker is on, skimmate is only forming for the fraction of time that the pump is on in the same side as your skimmer. This also causes wildly fluctuating skimmate density. Also, the JBJ skimmer is an airstone skimmer. I've come home many times to find the air pump (that comes with the skimmer) randomly seized up, or the air tubing popped off.
Sounds like Pleuralplexas runs it in the wrong compartment, should be in the constant level compartment.
I utilize this skimmer in three of my JBJ tanks. The skimmer fits quite well in the skimmer chamber which is when looking from the back-side of the tank is just to the right of the center chamber (media basket), left side when looking from the front of the tank. Granted the air line is flimsey and will not last more than a few weeks before it starts popping off the slightly noisy air pump. But spend a couple of bucks more on air line and place the pump in your cabinet and it works quite well. Heres a big hint. Don't use the sliding coupler/hanger that is suppose to adjust the height of the skimmer. Take it off and use the rubber knob on bottom of cup as a littler hanger on the wall between its chamber and the center chamber. This gets it far enough into the water that it will produce a constant flow of light skim. Be sure and turn up the pump to about 3/4 full. Also makes it convientant when you need raise your lid. You can slide it out high enough to open the lid and it goes right back to the same height with little effort.
Now this little air skimmer is only about $35 bucks and is a bargain as compared to these higher priced skimmers noted above. Granted it is really for a light Bio-load maybe 4 or 5 little fishys and a clean up crew. But it looks a lot better as you can only see a little of the cup sticking up from the back as compared to monster HOB skimmers on a nano tank. If your concentrating on corals and not fish it'll work just fine. Here's another hint: If your running about 40 lbs of rock and a lite Bio-load, try running your sponge in the top and a carbon bag in both 2nd and 3rd chamber. I then run a Purigen bag w/ Phosguard off off my return line on my chiller. Water is super pristine. But do have to suppliment w/ Ca, Ak, and other trace as the extra carbon will pull trace out of water. But have no need for a reactor(s) or a sump, and my Nitrates are 0.0, Phosphates run at / or below the 0.0165. The only things that grow in these tanks are what I plant.
Happy Reefing