Although I wouldn't deny that the reef's themselves are in danger due to overfishing, physical destruction and pollution, the attached article is based on the premise that global warming is real. It wasn't too long ago that there was a petition signed by 40,000+ environmental scientists disputing the claims that the globe is in fact warming, let alone a man-made phenomenon. Not to start a debate because this isn't the format, however, the argument comes down to politics more than actual science. Consequently, because of the pure scale of the issue that is at debate, there is too much financial implication (both for and against) that its virtually impossible to reach a peer-reviewable consensus.
Believe it or not, the single largest threat to reefs as we know it is physical destruction. In 3rd world countries, they are dynamiting reefs to use the rubble for concrete at a staggering pace.