The golf ball size pieces are fine, but don't add too much rock though. You don't want detritus to find refuge down there as well. Me personally, I would just use a couple baseball size pieces and call it a day. (along with the chaeto) This would make it a lot easier to keep that compartment clean and the micro fauna should proliferate as well. GL.
Yeah you really don't need a lot, and add chaeto and give pods a dark period, I do a reverse light cycle which also helps stabilize PH.
Shop vac's are a great bottom cleaning tool, HD sells one they call a bucket head, fits right on a 5 bucket, makes super easy, it's like $20
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