<a href=showthread.php?s=&postid=11123882#post11123882 target=_blank>Originally posted</a> by SDguy
Interesting stuff. I'm a protein biochemist, not a geneticist, so not sure how much more I would know about such things than you.
I'm sure your still more familiar with genetics than me

My experience with genetics and molecular biology is limited to a few semesters as an undergrad, in a Zebrafish neurobiology lab.
I'm not sure that type of genetic adaptation is possible on the timescale you are suggesting, especially in such a simple organism like a coral, with really no learning mechanism, like an immune system (someone correct me on that if necessary).
At a local reef club meeting recently, we had a researcher come and talk to us about coral disease that she studies, including all the various bacteria and viruses that can be found on coral. I was hypothesizing, with this whole temp swing issue, that perhaps different temps would favor different bacteria, never allowing one to gain hold on the coral...
Thats sort of the reason I suspect epigenetics are involved. If you look at things from the typical vertebrate perspective, invert immune systems are almost non-existent. However, the ocean is a harsh place and I don't think inverts would survive long if they didn't have some sort of immune mechanism.
I think on a primitive level, corals and other inverts carry a large amount of genes for immunity and adaptive purposes. The idea is that they can selectively switch genes on and off to adapt to various insults. I believe Epigenetics in humans, has become popular lately largely due to the observations of many genetic adaptive events, which seem to happen too quickly to be explained by conventional genetic theory.
So, lets say that a corals do regulate its genes in order to respond to environmental pathogens. To do this they must turn on and off genes at the appropriate time, but they seem to have these fairly large, cumbersome, variable, almost piecemeal genomes, so how could there be sufficient feedback mechanisms to regulate gene expression? My guess is there isn't â€"œ at least not to the extent of a more evolved organism. I think that the there are other mechanisms in place to control gene expression, on a much lower, more fundamental level. We see these mechanisms in all life forms, to some extent and I have no reason to believe they can't occur in the most simple organisms, in fact I believe they may have their roots with them. Also, it may occur even more efficiently, because DNA repair mechanisms are less evolved, from the zebrafish lab, one thing I did learn was that it's really tough to get any genetic change to last more than a generation or two.
This is certainly a controversial topic, and I've only started researching it, but here are a few articles that highlight some key idea I'm finding.
Little TJ, Hultmark D, Read AF.
Invertebrate immunity and the limits of mechanistic immunology.
Nature Immunology. 6, 651 - 654 (2005)
Little TJ, Kraaijeveld AR.
Ecological and evolutionary implications of immunological priming in invertebrates.
Trends Ecol. Evol. 19, 58â€"œ60 (2004)
Levenson JM, Sweatt JD.
Epigenetic mechanisms in memory formation.
Nat Rev Neurosci. 6, 108-118 (2005)
Bird A,
DNA methylation patterns and epigenetic memory.
Genes Dev. 1-16, 6-21. (2002)
Marquez LM, Miller DJ, MacKenzie JB, Van Oppen MJ.
Pseudogenes contribute to the extreme diversity of nuclear ribosomal DNA in the hard coral Acropora.
Mol Biol Evol. 20, 1077-1086 (2003)