A polarizing filter will help eliminate the reflection, they aren't cheap. Each lens will will be of a different diameter and would require it's own filter. The only polarizing filter I own is for my 105mm macro, as that's what I use mostly in my reef shooting. You will lose as much as 1 stop in exposure due to the way the filter works.
As far as other tidbits, the flash won't be of much help shooting shots of large tanks. You could increase your ISO to 400-800, 800 will be kind of grainy but it will give you some exposure latitude, check out the test shots you'll be taking at different ISO settings. I wouldn't screw around with the mid settings, if you can deal with the grain, 800 will give you the most control of indoor tank shooting.
A tripod won't help much unless you're interested in tank panoramas, the fish will move too fast to be able to capture them with speeds slow enough to require a tripod.
As far as lenses go, the 55-200 is probably slower than the 18-55 but will probably give you more control over composition, the subject matter will probably control the lens choice.
One final word of warning, if you do shoot with an ISO of 800 you WILL NOT be able to make images much larger than 5 x 7 without noticeable grain.
Hope this helps, and you will, of course share images with us after you go ...