Uggh, I have the same problem.
I don't believe there's a single mention in the manual anywhere that microbubbles can cause a false low level detection; probably should be in there.
This is really frustrating, the bubbles I have are very few and very tiny, but every 15 minutes or so they cause the pump to run.
It's a used system and sump I purchased from someone, really not sure what I can do to reduce bubbles. This was happening even without the skimmer running.