To kill them, just take some aquarium epoxy and cover all of them with it.
This will work, I've done it in the past. An easy fix since your tank is so small. And, by no means should you put either a file fish or a puffer in there. Your tank is fully stocked as it is, and, the puffer is not reef safe and file fish are extremely hard to care for and best left to the advanced aquarist.