I just went to JoMars and purchased a new 55 a little bit ago. While we were looking at we noticed that it says that it is tempered glass, do not drill panels.
The good news is that I talked to Phil and he told me how he has his setup so I am going to go the up and over route with the pvc instead.
When I called Fuji his son told me that they can drill 55's. However, they can only do up to 1" bulkheads. I thought about getting two of them drilled (for $45 each) but decided not to risk it. I would hate to ruin a brand new tank.