There are a number of possibilties that we have experienced.
Low alkalinity can cause problems for all photosynthetic organisms (Fix: bring up alkalinity carefully and spot feed)
Cyanobacteria (red slime) can cause some trouble -- even if it isn't appearing directly on the zoos. (Chemiclean works well, but causes dissolved O2 to plummet; use carefully!)
Chemical warfare from nearby corals (esp leathers) or stinging corals.
Lighting conditions -- some of our zoos like high light, most don't. (At one point, we had a similar problem with two zoo rocks, switched them and all was well; never seen anything quite like it before or since)
Deficiency in other trace elements -- You can add them, but it's easier to just start doing more frequency water changes.
I'm sure it could be something else, but we've seen all of the above. I hope other folks have more advice.
Best of luck!