The problem with running GFO is that it completely limits phosphate. With the ATS, one photon of light breaks down one molecule of Nitrate and one molecule of Phosphate, and creates one Chlorophyll. This is simplified but you get the idea. If you have no phosphate, then the algae growth is phosphate limited, and you may still end up with some nitrates in the tank because it cannot take them up without phosphate present.
If you're going to run GFO and and Algae Scrubber, then you need to
1) put the algae scrubber first
2) reduce the flow on the GFO to very, very low
Let the scrubber do the bulk of the work. Think of the GFO as your secondary filter, not the other way around. If for some reason the Algae Scrubber doesn't take it all the way down (maybe you over fed or you kid dumped a bunch of food in the tank, or you had a water quality issue like I did) then you have a secondary means of lowering your phosphate. It also acts as a primary means to buffer it down to minimal, while not completely removing it. The algae provides a vast array of nutrients that corals thrive on, so you want it growing and filtering and self-dosing.