It's been 6 weeks, and I have a report.
I had a skimmer that wasn't really doing anything. So I irresponsibly took it offline when I put my ATS online. The ATS wasn't mature at all. And boy did my livestock suffer. EVen water changes didn't help. I really thought I was going to lose many of my corals.
For the first 5 weeks, there was no sign of green hair algae. Only the brown slimy stuff that comes with new screens.
Then 1 week ago, I started to see green hair algae growing on the screens. Concurrently, my livestock has taken off incredibly! I must say, I also began topping off with Kalkwasser. It seemed like the ATS while reducing the hair algae in the tank, allowed diatoms or cyano to take over. I know that this is a pH issue, so I added the Kalk for top off.
Now, my water is getting crystal clear, the rocks are losing all traces of HA with minimal pruning. (did this to judge the effect of the ATS). And my corals are all waking up! My SPS Montipora responded very well. My nuclear green paly's are opening, and a zoa that I haven't seen open since I bought it is starting to open up! I'm thrilled!
My experience suggests that an appropriate time to remove the skimmer, is when you see hair algae upon your screen, and not before. I guess I shouldn't have gambled with my livestocks' lives, but they came through like champs, and I'm still not convinced the skimmer was doing anything.
Hope this helps!
Aaron