people build up bacteria during cycle by throwing in a dead shrimp right?
Ammonia is created by the decomposition .This brings nitrogen into the biological realm.
does dead microfauna also get used by bacteria of a dsb or live rock, and does microfauna feed on that same bacteria while alive?
dead organisms decompose and feed bacteria.
Depends on the organism and the type of bacteria.
or, do microcorpses lead to an unusable saturated substrate that absolutely requires changing?
They could contribute to a fouling sand bed but I'd put more weight on decaying food and other forms of detritus and bacterial mass along with potential anoxia in some areas.
wouldn't the anoxic layer, if left undisturbed "complete the loop" circle of life?
No, the nitrogen will turn to N2 gas in hypoxic conditions,ie with nitrate available when there is no free oxygen. No need for an anoxic area( no oxyugen and no nitrate) in a closed system as sulfate reduction will be common there if some organics are present and that leads to toxic hydrogen sulfide. Some other processes can also occur producing toxins.
we know for a fact there are processes going on in the ocean floor but can it all be scaled down? What other factors would play into a self sustaining ecosystem with just flow and light, if i could be so ignorant to ask. What else does a reef have.. Water, sand, sun, wind, life, death, anything impossible in a tank? ....thinking out loud
Dilution at the level in the ocean is impossible . An estiamte of the water change per cubic meter of water about 265 gallons) on the great barrrier reeef runs around a million gallons per day.
Further the concentration of life activity relative to water volume and surface area for gas exchange in even the most sparsely stocked aquariums is exponentially greater than in the sea.
The supply of nuttrients and other elements is much more consistent and comprehinsive than we can prelcisely mimic.
The pressures at depths on the sea floor are also much different. We know for example the anammox bacterria remove nitrogen there but they also produce hydrazine( jet fuel) toxic stuff but not an issue in the large water volume. Methane is also an end product of degradation but i don't think we will see it or want it in a reef tank.
In short ,the little droplets we keep are not comparable to the oceans